What Genuinely Matters When Choosing a Payment Gateway

Yoco Payment Gateway
Affordable solution
Yoco Payment Gateway
Yoco App dashboard
Payment link functionality
Supports subscriptions
No setup fees
Payfast
Multiple payment options
Payfast
Custom integration available
Popular payment methods
Event ticketing & invoicing
Access to Easy Advance
Introduction

What genuinely matters when choosing a payment gateway

A payment gateway, the system that lets an online store securely accept payments, is one of the most consequential technical choices an e-commerce business makes, since it directly affects the moment a customer decides whether to complete a purchase or abandon it.

These are the factors that genuinely matter when choosing a payment gateway.

Genuine security and customer trust

A payment gateway needs to be genuinely secure and recognisable enough that customers trust entering their card details, since a checkout that feels untrustworthy directly costs sales regardless of how good the rest of the store is.

Displaying recognised security certifications and payment method logos at checkout is a small but genuinely effective way to build this trust.

Understand the genuine full cost

Transaction fees, monthly costs and any setup fees all contribute to the genuine cost of a payment gateway, and comparing this full picture matters more than comparing a single advertised rate in isolation.

A gateway that looks cheaper on transaction fees alone can cost more overall once monthly and setup fees are included.

Check genuine payment method coverage

Supporting the payment methods South African customers actually use, cards, and increasingly instant EFT and mobile payment options, reduces checkout friction and genuinely improves conversion.

A gateway supporting only card payments may lose customers who prefer other, increasingly common payment methods.

Consider genuine integration and support quality

A payment gateway that integrates smoothly with the specific e-commerce platform being used, and offers responsive support when a payment issue arises, matters considerably more in practice than it does when comparing options on paper.

Confirming a payment gateway operates within the South African Reserve Bank‘s regulatory framework is a genuine, basic check worth doing before committing.

Frequently asked questions

Why does a payment gateway’s security matter so much?

A checkout that feels untrustworthy directly costs sales, regardless of how good the rest of the store is.

What should be compared beyond a single advertised transaction rate?

The genuine full cost including monthly and setup fees, since a cheaper rate alone can still cost more overall.

Why does payment method coverage matter?

Supporting the payment methods South African customers actually use reduces checkout friction and improves conversion.

Does integration quality matter when choosing a gateway?

Yes, smooth integration with the specific e-commerce platform and responsive support matter more in practice than on paper.

What is a payment gateway’s genuine role?

Letting an online store securely accept payments at the exact moment a customer decides whether to complete a purchase.

Originally published in 2024. Updated September 2026 into a clearer, principle-based guide to choosing a payment gateway, without endorsing specific unverified providers.

Main Features

Shopping cart integration

It’s important that your payment gateway integrates with your existing shopping cart platforms to create a seamless payment process. There are a wide variety of online shopping cart platforms to choose. Each offer different tools and functionalities depending on your business needs such as store building, payment processing and customer management tools. Some of the best known ones in the market are Shopify and WooCommerce.

Security

Security is the most important consideration for a payment gateway. A secure gateway will keep cardholder payment data safe and secure. One of the ways payment gateways do this is by providing consistent fraud protection and being Payment Card Industry Data Security Standard (PCI DSS) compliant. In South Africa payment gateways also have to comply with the Payment Association of South Africa (PASA).  All websites that accept credit card payments on their website need to be compliant with both.

For additional security, 3D Secure (3DS) validation provides additional security against fraud. This 2-step authentication means no payments can go through without the cardholder authorising it first.

Multiple payment options

There has never been more payment method options available for customers to pay online. Because of this, it’s a good idea that your online store offers customers multiple ways to pay, with the option to choose one they know and trust. Some options your payment gateway can offer are Mastercard and Visa credit card and debit card payments, Masterpass, SnapScan, Zapper, Instant EFT, SCode and Mobicred.

Payment Link

More recently, merchants are now able to accept payments even if they don’t have a website through a payment link.  Customers can pay their bill by following the link. The payment is then securely processed online, without the need of a card machine, or a website.

Mobile Payments

Most online shoppers use their mobile phones to do their online shopping, according to the PayFast Ecommerce Performance Index, followed by desktop and tablet. This means your customers are most likely to be using their phones. It’s important that your payment gateway be easy to navigate for mobile users too.

Reports and analytics

Some of the data you can expect from payment gateway software are a view of transactions and day-to-day management of inventory and sales. You should also be able to access a reconciliation report.

Pricing

Depending on your payment gateway service provider, you may have to pay setup or monthly fees. All providers, however, charge a per transaction fee which can start from anywhere from 2%.

Other costs to consider are minimum swipe fees (for swipes under specific amounts) or settlement fees (when you have to request settlement or per day traded).

Buyer's Guide

Business needs

Before choosing payment gateway software, it’s important to consider the following: which payment options (e.g credit card and debit card payments, Masterpass, SnapScan, Zapper) are your customers most comfortable using and are those options offered by the specific brand you are considering.

The second consideration is how much volume you expect to sell on average. Many payment gateways charge lower transaction fees the more you transact.

Setup process

Similar to how it’s now possible to DIY an e-commerce website with the introduction of out-of-the-box solutions, payment gateway setup has never been easier. Most business owners can set up their own gateway very quickly and easily.

There are several ways websites can integrate into a payment gateway to receive online payments. Many websites come with pre-built shopping carts that usually just require an ID and other basic information from the gateway, in order to be integrated.

Some gateways will require an Internet merchant account with one of South Africa’s main banks to receive card payments. To get an Internet merchant account you need to have a 6 month trading history, and provide proof of income.

Top Benefits of Payment Gateways

  • Increase market access – Leads to increase in sales.
  • Easy setup – Straightforward and easy to use.
  • Customer convenience – Customers can shop from any location at any time.
  • Security – Protect cardholder payment information
Compare our best picks
Yoco Payment Gateway

Pros

No payout fees charged.
Simple and Affordable
Unified Sales Management
Wide E-commerce Platform Compatibility
Fast and Secure Payouts

Cons

Limited payment methods available.
Limited Functionality for Subscriptions

Yoco is a good option for South African small businesses looking for a user-friendly and affordable way to accept online payments. However, if you need a wider range of payment methods or have a global customer base, you might consider other payment gateways.

Payfast

Pros

Experience in the market.
Wide range of payment options
Easy to set up

Cons

Transactions happen only on Payfast’s online secure payment system
Withdrawal fees
Limited outside South Africa

Payfast is a good option for South African businesses and individuals who want a user-friendly payment gateway with a variety of payment options.

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