What Genuinely Matters When Choosing Payroll and HR Software

Monday.com
Best for versatile employee management system
Monday
Ready-to-use HR templates
Recruitment pipeline
Attendance tracker
App integrations
Xero
Best for 3rd party apps access
SME Reviews 1
Automate income and expense tracking
Real-time inventory management
Bank reconciliation tools
Create digital purchase orders
Access to JAX AI finance partner
Deel
Best for hr and payroll
Deel
Global payroll processing
Automated compliance
Artificial intelligence (AI) assistance
Built-in HRIS for managing employee data and workflows
Introduction

Payroll and HR administration becomes a genuinely significant burden as a small business’s team grows, and payroll and HR software exists specifically to reduce this burden, but choosing the right one means matching it to the business’s actual size and compliance needs, not simply the most fully-featured option available.

These are the factors that genuinely matter when choosing payroll and HR software.

Genuine South African compliance support

Software that properly handles South African tax, UIF and other statutory payroll deductions correctly, and stays updated as these requirements change, genuinely reduces compliance risk compared to software built primarily for a different jurisdiction.

This is one of the most important, and most easily overlooked, factors when comparing options marketed internationally.

Match features to genuine current team size

A business with a handful of employees doesn’t need the same complexity as one managing a large, multi-location team, and choosing based on genuine current size, with room to grow, avoids paying for unused capability.

Our guide to employee benefits that genuinely matter covers a related area worth considering alongside payroll administration.

Consider genuine self-service value for employees

Employee self-service features, accessing payslips, updating personal details, requesting leave, reduce administrative back-and-forth and are genuinely valued by staff, making this worth weighing even for a smaller team.

This kind of self-service also reduces the administrative burden on whoever currently handles these requests manually.

Check genuine data security for sensitive information

Payroll and HR software holds genuinely sensitive personal and financial information, so checking a provider’s data security practices matters as much as its feature set, particularly given South Africa’s data protection requirements.

The Information Regulator sets out the data protection obligations this kind of sensitive information falls under, regardless of which software handles it.

Frequently asked questions

Why does South African compliance support matter specifically?

Software built for a different jurisdiction may not properly or currently handle South African tax and UIF deductions.

Should every small business use the same payroll software features?

No, choosing based on genuine current team size, with room to grow, avoids paying for unused capability.

Does employee self-service add genuine value for a small team?

Yes, it reduces administrative back-and-forth and is genuinely valued by staff even in a smaller business.

Why does data security matter for payroll and HR software specifically?

It holds genuinely sensitive personal and financial information, falling under South Africa’s data protection requirements.

What administrative burden does this software genuinely reduce?

Payroll calculations, statutory deductions, payslip issuing and related HR administration that grows with headcount.

Originally published in 2024. Updated September 2026 into a clearer, principle-based guide to choosing payroll and HR software, without endorsing specific unverified products.

Main Features

Payroll management

Your payroll management tool helps with the administration of an employee’s financial records like the salaries, wages, bonuses, deductions, and net pay.

It ensures details like contact information, addresses, new benefits, salary increases, and promotions are updated as they change. Certain fixed and financial information is submitted to SARS twice a year.

You can use employee self-service tools to let employees update their details, beneficiaries, apply for leave, file expense claims, and more, which removes a plethora of admin away from the HR and payroll teams.

Legislative and payroll reporting 

Beyond just generating automated payslips for employees, the right software helps small business owners to adhere to payroll legislation.  An automated solution can calculate the complex formulas for the various statutory deductions and generate compliance reports.

Some of the deductions that need to be considered are: PAYE (the tax deducted from your employees),  the skills development levy (SDL),  Unemployment insurance fund (UIF).  Other legally required contributions include the payments to cover Compensation for Occupational Injuries and Diseases (COID). These contributions/payments are paid by the employer, not the employee.

Medical aid, pension, provident and retirement funds

Every business offers a selection of benefits to employees regarding paid leave, contributions towards retirement funds, medical aids, and making certain statutory payments.  It is essential to know what is required by legislation and the additional non-compulsory benefits provided to employees.

You don’t have to contribute towards a retirement fund or medical aid unless specified in a regulating measure for that industry or agreed upon in the employment contract. 

Data reporting & analytics 

Use, measure and analyse all of your workforce data, which helps with workforce planning and managing non-compliance. 

A solid audit trail should be a feature of your payroll software. Audit trails are beneficial because they can validate any unusual payments and can track changes to a payroll. Audit trails can also be used if there is any suspicion of fraudulent activities.

Leave management

Leave management is an important part of payroll and HR software. The software will help you to manage both annual, sick, family responsibility or maternity leave. Some software options also offer the option of self-service, where employees are able to apply for leave or download payslips themselves. 

HR files management

HR document management helps business owners to manage the entire lifecycle of employee documents to ensure proper storage of required records. This has never been more relevant with the POPIA legislation coming into effect. POPIA requires that employers protect employees’ personal information. 

New employee onboarding

Onboarding candidates and employees refers to integrating new hires into the organisation. HR software can help you manage the entire process from  new hires, onboarding workflows and generate reports to get insights into employee performance. 

Other features

Your software should also be able to handle tasks such as – handle annual, ad hoc and performance bonuses, travel allowance and reimburse kilometers, commissions and overtime, independent contractors and labour brokers, bursaries and other non-cash benefits.

Pricing

Free trial

The free trial can range from seven to 30 days. For most platforms, you can sign up with a Google email account. You will only be required to provide your credit card details once the trial is completed.

Monthly or annual  subscriptions

Most HR and payroll software businesses offer annual and monthly subscriptions. Depending on the platform, each plan may come with many functionalities, including basic payroll processing, tax calculations and filing. HR functionalities  you can expect are employee onboarding, employee database management, HR files management, employee self-service, time off management.

Buyer's Guide

Cloud-based HR and payroll software has done a lot to ease the administrative  burden associated with payroll. Simply put, it offers better and faster software that’s easier for your business to use whereas traditional HR systems required installing across your network. HR cloud systems also allow you to skip on expensive software, which often requires infrastructure and regular maintenance from IT experts. When selecting the right software for your business it’s  important to consider the needs of your business, its size and integration with other software, including accounting and CRM. 

Consider the following: 

Easy to use –  An easy-to-use dashboard that allows employers to sign up, add employees and start payroll processing, easily onboard candidates and employees or track time, leave and attendance. 

Available anywhere, anytime – Business owners  can access their data at any time. All they need is an Internet connection.

Tax submissions – Comply with tax regulatory requirements such as compliance reports and keep track of annual changes to tax laws and regulations that impact payroll tax calculations. A  good payroll software solution will be constantly updated to align with the latest tax laws and tables, so you don’t need to update your spreadsheet formulas or learn to make new manual calculations every year.                                                                                                                             

Unlimited companies, employees and users – Choose a software option that will allow you to grow as you expand and hire more employees.  The most effective payroll software allows you to scale for growth. With some cloud solutions, you can pay per payslip per month and easily add more employees as you need to.

High data security -HR is at the forefront of data security. An HR system that not only ensures the security of personal data but also ensures that it is updated and correct, deleted, or anonymised in accordance with relevant legislation is a must.

Flexible pricing – The pricing plan is often based on the employee count. You can also choose between a monthly or annual subscription. 

Payroll & HR Software Benefits 

  • Save time and resources – completely automate administrative tasks.
  • Always available – improve accessibility with cloud-based software across devices.
  • Bird’s eye view – streamline processes to better visibility into business performance.
  • Reduce costly mistakes – eliminate errors with data capture or calculation.
  • Reduce risk – put tight financial controls in place to reduce the risk of payroll fraud.

 

Compare our best picks
Sage HR and Payroll

Pros

Leave Management
Solid Core HR Features

Cons

Limited Functionality
Fewer Integrations

The Sage HR is an automated time and attendance-tracking software platform that forms part of their suite of products.

Pros

Affordable for small businesses.
Has a free plan.
Has local payroll and compliance services

Cons

No local pricing.
Plans are packed with features which can be overwhelming for businesses.

Deel's HR and payroll services are great for SMEs looking to optimise their hiring and employee management process or for businesses looking to hiring globally and comply with local labour laws. Additionally, SMEs can be assured they will remain tax and payroll compliant with Deel's local payroll services.

Pros

Supports unlimited users at no extra cost
Highly intuitive dashboard with automated bank reconciliation
Strong collaboration tools for business owners and accountants
Connects with over 1000 external smart business apps

Cons

The Starter plan limits invoices and bills
Lacks inbound phone support; relies on email and callbacks

Xero is widely recognised as the ideal accounting solution for SMEs because of its affordability, user-friendly interface, robust automation, and flexible cloud capabilities.

Monday.com

Pros

Easy to Use and Intuitive
Great Collaboration Features
Automation Capabilities
Large Template Library
Free Plan Available
Highly customisable

Cons

Pricing Structure
Limited Mobile App Functionality
Complexity for Advanced Needs
Potential for Interface Clutter

Monday.com is a flexible, multi-faceted software that offers solutions for a wide variety of workplace functions including CRM and project management

SME Solutions Newsletter

Practical tools, insights, and strategies for every stage of your business journey.

Subscription Form | Solutions